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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactttatatctgctcgtttgtaacgatccaatgtatgtgtttattattcacgcgtaattctttggacaaagctcacgattaattttctcttcattgcagAGCCATGCTGGGCTATTCAATCTTTGTATCGTGGTTTTGATAGCTGTCAACAGCCGGCTTATTATTGAGAACTTGATGAAG

Basic information

species Physcomitrella patens
transcript PP1S66_164V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67709252|gb|BJ965068.1|BJ965068
EST:     ATCAAAAGATTAAGGAGAGCCCCTTGAGTTCGGATGCAATCTTTCGACAG                         AGCCATGCTGGGCTATTCAATCTTTGTATCGTGGTTTTGATAGCTGTCAAC
genomic: ATCAAAAGATTAAGGAGAGCCCCTTGAGTTCGGATGCAATCTTTCGACAGgttagtggag ... ttcattgcagAGCCATGCTGGGCTATTCAATCTTTGTATCGTGGTTTTGATAGCTGTCAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcacgcgtaattctttggacaaagctcacgattaattttctcttcattgcagAGCCATGCTGGGCTATTCAATCTTTGTATCGTGGTTTTGATAGCTGTCAACAGCCGGCTTATTATTGAGAACTTGATGAAG
                                gattaat  putative branch site (score: 3)
                                      ttttctcttcattgc  CT-rich tract
                                 attaattttctctt  TA-rich tract