1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaattgtcttcgcgcgctggatgttcgtcgcgtttgattgtactcggtcttggggaatttcatcgctcgtagagcttactgtgcggttttcggttttcatagttgatgccagtggtttggtttctcgatctgacggcgcgcgggggtggttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAGAGAAGATCGCTCTCGCTGCCGCTGCCAAGGGGCGGGCTCCTAAGGAAC
species | Physcomitrella patens |
transcript | PP1S66_139V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAG AGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAEST: gi|67716671|gb|BJ966931.1|BJ966931
genomic: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAGgtaattgtct ... ttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGA
EST: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAG AGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAEST: gi|67508407|gb|BJ941274.1|BJ941274
genomic: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAGgtaattgtct ... ttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGA
EST: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAG AGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAEST: gi|162184036|gb|FC359406.1|FC359406
genomic: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAGgtaattgtct ... ttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGA
EST: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAG AGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGA
genomic: TGGGAAGCGCTTATCCGACTATTGCTGCTGATGCTCTGGCTCGATTCCAGgtaattgtct ... ttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGA
gatgccagtggtttggtttctcgatctgacggcgcgcgggggtggttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAGAGAAGATCGCTCTCGCTGCCGCTGCCAAGGGGCGGGCTCCTAAGGAAC
atctgac putative branch site (score: 8)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgtcttcgcgcgctggatgttcgtcgcgtttgattgtactcggtcttggggaatttcatcgctcgtagagcttactgtgcggttttcggttttcatagttgatgccagtggtttggtttctcgatctgacggcgcgcgggggtggttgtgtgcagAGGCTGCAAGGGCGGGATGTGAATTTTATCACAGGAACTGACGAGCATGGAGAGAAGATCGCTCTCGCTGCCGCTGCCAAGGGGCGGGCTCCTAAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA