1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatcattttatatttatttttttatttagttattagggttttatgtgtgctacactgttgggaaatgttgtgttgatgggattttatggacgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGACCAAGATCAATCTGCTTAAGCTGGCTCATTTTGCGGTCATTGTATCGA
species | Physcomitrella patens |
transcript | PP1S66_117V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGEST: gi|100419692|gb|BY957675.1|BY957675
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGEST: gi|208377001|gb|DC936779.1|DC936779
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCAAGEST: gi|100362608|gb|BY947438.1|BY947438
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGEST: gi|67578570|gb|BJ950737.1|BJ950737
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGEST: gi|162195601|gb|FC371902.1|FC371902
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGEST: gi|100442510|gb|BY963204.1|BY963204
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
EST: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAG GCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
genomic: ACCAGCTCACGCAGAAGCTCGACCAGTTCGTGGCGCTCACCGTGTTCCAGgtattggatg ... acgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAG
gtgtgctacactgttgggaaatgttgtgttgatgggattttatggacgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGACCAAGATCAATCTGCTTAAGCTGGCTCATTTTGCGGTCATTGTATCGA
tgttgat putative branch site (score: 7)
attttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcattttatatttatttttttatttagttattagggttttatgtgtgctacactgttgggaaatgttgtgttgatgggattttatggacgattgcagGCGGGAGACACCCTTGTTCAGCTTTACCATAACTTTATTCGGGACTTCGAGACCAAGATCAATCTGCTTAAGCTGGCTCATTTTGCGGTCATTGTATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - tgctaca