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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtaagttgattggatactcatatttttatttatatatcatacatacacctatatcgcactcaggtcttacggttttgaattgggggattttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGGGCTAATCACTGCCGGACTTCCTTTCTAACTTTTATTTACTCGTTCACAT

Basic information

species Physcomitrella patens
transcript PP1S65_2V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67572811|gb|BJ945635.1|BJ945635
EST:     GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
EST: gi|18353641|gb|BJ185696.1|BJ185696
EST:     GATTAATCTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
EST: gi|100364396|gb|BY984591.1|BY984591
EST:     GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
EST: gi|67507918|gb|BJ940793.1|BJ940793
EST:     GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
EST: gi|100413675|gb|BY974934.1|BY974934
EST:     ATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: ATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
EST: gi|67569388|gb|BJ942212.1|BJ942212
EST:     GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAG                         GTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG
genomic: GATTAATTTTCAAGCTTAAGCGTGTTGCGGTCCTTTTCTGATTTGATTAGgtgagagtct ... ttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacctatatcgcactcaggtcttacggttttgaattgggggattttctgtttagGTTTGATCGCCAGTTGCGCCGTCTGACGAGGTTTTATATTCCCCTGGAAGGGCTAATCACTGCCGGACTTCCTTTCTAACTTTTATTTACTCGTTCACAT
                   gtcttac  putative branch site (score: 3)
                                           ttttctgttt  putative PPT
                            ttttgaatt  TA-rich tract