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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacacaccaatctatcaatggtagatatgaatggcggttttactccttgaaaatataacgtacaatgtcttacttactggtgtctgtcgacgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTCCAGATAGTCCGTATGCCGGAGGCGTGTTTCTGGTCACCATTCATTTCCC

Basic information

species Physcomitrella patens
transcript PP1S65_161V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S65_161V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ11261 (Selaginella moellendorffii), 3'ss of exon 1
gacacaccaatctatcaatggtagatatgaatggcggttttactccttgaaaatataacgtacaatgtcttacttactggtgtctgtcgacgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTCCAGATAGTCCGTATGCCGGAGGCGTGTTTCTGGTCACCATTCATTTCCC
              | |  ||  |||      |  | |     | || |    |||    |  ||||    | || ||  |||   ||    |   ||||| ||||| ||||||||||||||||||||||| || || || ||||| ||||| |||||||| || || || || || || ||||| ||||| || |||||
-------------gtaagcggccgat-----cgatgttcgcgattctagggtttatgtgatggaatggaaaattt-ctcctgttcttc----tctcccagGGCCTGTCGCGGAGGATATGTTCCACTGGCAAGCGACGATCATGGGACCTCCCGATAGTCCCTACGCGGGTGGGGTTTTCCTGGTGACCATCCACTTCCC

upper sequence: PP1S65_161V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ15547 (Selaginella moellendorffii), 3'ss of exon 1
gacacaccaatctatcaatggtagatatgaatggcggttttactccttgaaaatataacgtacaatgtcttacttactggtgtctgtcgacgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTCCAGATAGTCCGTATGCCGGAGGCGTGTTTCTGGTCACCATTCATTTCCC
          |      | | | ||| |   | ||| || ||    || |    ||   ||  ||  | |  | |  |  | |||           ||||| ||||| ||||||||||||||||||||||| || || || ||||| ||||| |||||||| || || || || || || ||||| ||||| || |||||
---------gtaagcggacgatcgatct---tcgcgattctagggttt-atgtgatggagtggaaaatttctcctgttcttctctc----------ccagGGCCTGTCGCGGAGGATATGTTCCACTGGCAAGCGACGATCATGGGACCTCCCGATAGTCCCTACGCGGGTGGGGTTTTCCTGGTGACCATCCACTTCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208377427|gb|DC906668.1|DC906668
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100363083|gb|BY984348.1|BY984348
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|208370792|gb|DC936196.1|DC936196
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162189611|gb|FC365833.1|FC365833
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100354402|gb|BY945854.1|BY945854
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100394366|gb|BY972033.1|BY972033
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100452167|gb|CJ975134.1|CJ975134
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAAGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100449267|gb|CJ973566.1|CJ973566
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAAGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|18325011|gb|BJ157007.1|BJ157007
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100355760|gb|BY965132.1|BY965132
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100379107|gb|BY986578.1|BY986578
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|18373254|gb|BJ204856.1|BJ204856
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCA
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCA
EST: gi|162267760|gb|FC443750.1|FC443750
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|208355479|gb|DC942599.1|DC942599
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100352011|gb|BY964660.1|BY964660
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162213519|gb|FC389391.1|FC389391
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162189610|gb|FC365832.1|FC365832
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100399372|gb|BY954337.1|BY954337
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100441370|gb|BY962659.1|BY962659
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGGCCT
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGG-CCT
EST: gi|18365278|gb|BJ197352.1|BJ197352
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCAC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCAC
EST: gi|100386393|gb|BY951189.1|BY951189
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162247875|gb|FC421765.1|FC421765
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100382002|gb|BY968981.1|BY968981
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100386879|gb|BY988148.1|BY988148
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGGAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100394985|gb|BY990020.1|BY990020
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|18371924|gb|BJ203526.1|BJ203526
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162209887|gb|FC386029.1|FC386029
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100447908|gb|CJ972207.1|CJ972207
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100415280|gb|BY975238.1|BY975238
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100428618|gb|BY959349.1|BY959349
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100443611|gb|BY982037.1|BY982037
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCCACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|208361362|gb|DC935077.1|DC935077
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100404195|gb|BY955303.1|BY955303
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|18343125|gb|BJ175163.1|BJ175163
EST:     TAAAGAGTTGAAAGATCTGCANAAGGATCCCCCGACATCATGCANCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTAC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTAC
EST: gi|100425158|gb|BY977002.1|BY977002
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|208392544|gb|DC933944.1|DC933944
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100407393|gb|BY991679.1|BY991679
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100446504|gb|CJ970803.1|CJ970803
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100426798|gb|BY977368.1|BY977368
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGGCCT
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGG-CCT
EST: gi|208372127|gb|DC940309.1|DC940309
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|208371528|gb|DC936249.1|DC936249
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|162241124|gb|FC417756.1|FC417756
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100402977|gb|BY973446.1|BY973446
EST:     TAAAGAGGTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GGAC-TGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCT
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagG-ACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCT
EST: gi|18372423|gb|BJ204025.1|BJ204025
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCC
EST: gi|208358519|gb|DC930651.1|DC930651
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGANGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100364186|gb|BY984486.1|BY984486
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAAGATATGTTCCACTGGCAGGCTACAATTATGGG
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGG
EST: gi|100361450|gb|BY984094.1|BY984094
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
EST: gi|100364160|gb|BY966745.1|BY966745
EST:     TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCG                         GACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC
genomic: TAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 18

GCTGTGTTGGACCTTTGGTGGTCGCGCCTGATGGCCTCTAAGCGCATTCTTAAAGAGTTGAAAGATCTGCAGAAGGATCCCCCGACATCATGCAGCGCCGgtgagtcttc ... cgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTCCAGATAGTCCGTATGCCGGAGGCGTGTTTCTGGTCACCATTCATTTCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgaaaatataacgtacaatgtcttacttactggtgtctgtcgacgtacaccagGACCTGTGGCGGAGGATATGTTCCACTGGCAGGCTACAATTATGGGGCCTCCAGATAGTCCGTATGCCGGAGGCGTGTTTCTGGTCACCATTCATTTCCC
                         tacttac  putative branch site (score: 18)
     aaatataa  TA-rich tract