Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgcgtggtgggggaagaaaagaatagaacggttctcatgagatttatggctgaaatttgtagagacgatttcattcttggattgtcttggtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG

Basic information

species Physcomitrella patens
transcript PP1S64_220V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S64_220V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT1G70580.4 (Arabidopsis thaliana), 3'ss of exon 2
ctgcgtggtgggggaagaaaagaatagaacggttctcatgagatttatg----gctgaaatttgtagagacgatttcattcttggattgtcttggtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG
         |    ||       ||      |   | ||||| || ||     | ||| || ||   ||    |||  ||     | | ||    |     |||||||| ||||| |||||||| ||||| |||||| | || ||||| || || |||||||||||||||
---------gtaacaactttgttatgcgtttgcagttatgagcttcattagctgttgagatatgggaagcgtctttggtttcctaactttcacaatt---acagATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388772|gb|BY970920.1|BY970920
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|18326988|gb|BJ158989.1|BJ158989
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162155391|gb|FC332005.1|FC332005
EST:     GGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100436557|gb|BY961277.1|BY961277
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100419458|gb|BY957584.1|BY957584
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100356833|gb|BY965303.1|BY965303
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162181882|gb|FC357689.1|FC357689
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100352692|gb|BY945399.1|BY945399
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162171669|gb|FC348130.1|FC348130
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100385535|gb|BY969872.1|BY969872
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162199479|gb|FC373781.1|FC373781
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162223962|gb|FC400320.1|FC400320
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162160782|gb|FC336681.1|FC336681
EST:     GGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100399005|gb|BY990625.1|BY990625
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162197024|gb|FC373364.1|FC373364
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100371629|gb|BY968072.1|BY968072
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100419055|gb|BY975835.1|BY975835
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAGGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162252058|gb|FC428297.1|FC428297
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100425857|gb|BY977155.1|BY977155
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100412607|gb|BY974818.1|BY974818
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100444613|gb|BY982442.1|BY982442
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162154422|gb|FC330424.1|FC330424
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100356462|gb|BY946377.1|BY946377
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100364771|gb|BY947900.1|BY947900
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162166622|gb|FC343514.1|FC343514
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162191243|gb|FC367921.1|FC367921
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100388497|gb|BY952099.1|BY952099
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100436447|gb|BY961222.1|BY961222
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100357096|gb|BY983691.1|BY983691
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100384231|gb|BY969362.1|BY969362
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100412565|gb|BY974797.1|BY974797
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162152416|gb|FC327979.1|FC327979
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100446806|gb|CJ971105.1|CJ971105
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100384129|gb|BY950515.1|BY950515
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162187053|gb|FC362835.1|FC362835
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100386709|gb|BY970250.1|BY970250
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|162189527|gb|FC365749.1|FC365749
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
EST: gi|100388392|gb|BY951994.1|BY951994
EST:     GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAG                         ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC
genomic: GAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 35

GGACCCAGAGAATTTGAACCTGAATGTGAAGAAGACCGTGTATGCGGTGCGAGGGGAGCTGTACTTACGAGCTTCGGAGCTGCAGAAAGAGGGCAAGAAGgtggattgca ... gtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggctgaaatttgtagagacgatttcattcttggattgtcttggtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG
                                              tcttcgc  CT-rich tract
        aaatttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgcgtggtgggggaagaaaagaatagaacggttctcatgagatttatggctgaaatttgtagagacgatttcattcttggattgtcttggtcttcgcagATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC