1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtgataatgctgtagttgtgcagaccatgttttggcttcattactacaagagggaaaacctggatcgggacctctaacattgttgttgatacctttcagGCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAAGAGTGCTAGTGCGAGTTCTGTACTTCTCGGTAATTAAGAGATGGCCGAA
species | Physcomitrella patens |
transcript | PP1S63_43V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACATATAACTTTCATCTCCTGCTCATCACGGAGTAGTCTCAGTCACACAG GCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAAEST: gi|67717739|gb|BJ967998.1|BJ967998
genomic: ACATATAACTTTCATCTCCTGCTCATCACGGAGTAGTCTCAGTCACACAGgttatacttt ... tacctttcagGCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAA
EST: GTAGTCTCAGTCACACAG GCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAA
genomic: GTAGTCTCAGTCACACAGgttatacttt ... tacctttcagGCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAA
tacaagagggaaaacctggatcgggacctctaacattgttgttgatacctttcagGCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAAGAGTGCTAGTGCGAGTTCTGTACTTCTCGGTAATTAAGAGATGGCCGAA
tacctttc CT-rich tract
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgataatgctgtagttgtgcagaccatgttttggcttcattactacaagagggaaaacctggatcgggacctctaacattgttgttgatacctttcagGCAGTCATATTTGCTTGATCTTTCCTGTTCTCAAGCTCGTTTCTCTTTGAAGAGTGCTAGTGCGAGTTCTGTACTTCTCGGTAATTAAGAGATGGCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - tgctgta