1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaccttgagttgagctggtgaacagcgtcggaaggtggcctcagattgtcaattgtaactgtgttctcatttgtgtatcgatgtgcgcaaactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGATTACAGGGGGCTCTGTAGTTG
species | Physcomitrella patens |
transcript | PP1S60_129V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|22132526|gb|BQ827212.1|BQ827212
genomic: CGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: CCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|22132462|gb|BQ827175.1|BQ827175
genomic: CCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: CCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|67574644|gb|BJ947468.1|BJ947468
genomic: CCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: ATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|15729419|gb|BI741306.1|BI741306
genomic: ATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: GCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|162224222|gb|FC399494.1|FC399494
genomic: GCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: ATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGATTGCGGAAGTAGCCATCTGAGATGAEST: gi|162227636|gb|FC402629.1|FC402629
genomic: ATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: CCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGATTGCGGAAGTAGCCATCTGAGATGAEST: gi|67698060|gb|BJ958293.1|BJ958293
genomic: CCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: ATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|18371364|gb|BJ202966.1|BJ202966
genomic: ATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: GTGCCATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGAEST: gi|18346800|gb|BJ178845.1|BJ178845
genomic: GTGCCATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
EST: GTGCCATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAG AATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
genomic: GTGCCATTCCTCACATCCCCCTTCACCCGCAGTTCCACCTCTATCGCCAGgttctccctc ... aactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGA
attgtcaattgtaactgtgttctcatttgtgtatcgatgtgcgcaaactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGATTACAGGGGGCTCTGTAGTTG
ttgtaac putative branch site (score: 15)
aattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaccttgagttgagctggtgaacagcgtcggaaggtggcctcagattgtcaattgtaactgtgttctcatttgtgtatcgatgtgcgcaaactgggcagAATTTAGAGACTTTTCGTGCTCAAGAGTGCGGAAGTAGCCATCTGAGATGATTACAGGGGGCTCTGTAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG