1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgaacttttgcgtccacacgtgattacagtccagctcggaaaccgttgattggttgcgagagtgtccgctccaggattaatgcagttcaaagtcgttctggattcatattgttttttttgtagaggtatcgatttttctgatcatggcgtggaaatcagaagtgtatgttcttctgtgatgtgctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGGGCGAATTTGGCTGCTTCTGCTGTGTCGAATTCATCAACAGCTGAGAAG
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCC GTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGEST: gi|18345421|gb|BJ177464.1|BJ177464
genomic: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCCgtatgaactt ... ctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAG
EST: GCGGC-CCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCC GTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGEST: gi|100433415|gb|BY960569.1|BY960569
genomic: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCCgtatgaactt ... ctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAG
EST: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCC GTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGEST: gi|18375325|gb|BJ206903.1|BJ206903
genomic: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCCgtatgaactt ... ctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAG
EST: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCC GTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAG
genomic: GCGGCTCCCCCGACCTTGTTGCGCTCCGCGTCTCTCTTCTCAAAAAATCCgtatgaactt ... ctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAG
tgatcatggcgtggaaatcagaagtgtatgttcttctgtgatgtgctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGGGCGAATTTGGCTGCTTCTGCTGTGTCGAATTCATCAACAGCTGAGAAG
ttctgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaacttttgcgtccacacgtgattacagtccagctcggaaaccgttgattggttgcgagagtgtccgctccaggattaatgcagttcaaagtcgttctggattcatattgttttttttgtagaggtatcgatttttctgatcatggcgtggaaatcagaagtgtatgttcttctgtgatgtgctcatagcagGTCTGGAATTAATGTTGGGCTGCCGGGAGGATTATGGCGACCGCTGTTGAGGGCGAATTTGGCTGCTTCTGCTGTGTCGAATTCATCAACAGCTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA