1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttgtaagaatctgtctatttgatggttgaattgaatattctgttctttttggtaagtacgtatcagaatgtcctaatgcaatgtttggttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTTCCAGAGTATCGTTCTGGAGGTTGTGCAGAGAGGGGAATTAGGCGGTCTA
species | Physcomitrella patens |
transcript | PP1S59_140V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAG GTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTTEST: gi|100410837|gb|BY956211.1|BY956211
genomic: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAGgtaacatgcc ... ttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTT
EST: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAG GTAGAAATGGAATCGAGTGAAGCGCCTACTTATATTTGTCCCCTGAT-ATGEST: gi|162200911|gb|FC377314.1|FC377314
genomic: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAGgtaacatgcc ... ttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATT-GTTCC-TGATTATG
EST: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAG GTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTT
genomic: GCAGTGACGAAACTCTATCTGTGGCATCTCCTGCAACAAGTGCAGAGAAGgtaacatgcc ... ttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTT
tctttttggtaagtacgtatcagaatgtcctaatgcaatgtttggttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTTCCAGAGTATCGTTCTGGAGGTTGTGCAGAGAGGGGAATTAGGCGGTCTA
tcctaat putative branch site (score: 5)
aatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtaagaatctgtctatttgatggttgaattgaatattctgttctttttggtaagtacgtatcagaatgtcctaatgcaatgtttggttgtgtgcagGTAGAAATGGAATCGAGTGAAGCGCCTATTTATATTGTTCCTGATTATGTTCCAGAGTATCGTTCTGGAGGTTGTGCAGAGAGGGGAATTAGGCGGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG