1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atggtccagttgcactagctacttctgcgtagacaccgcttggtcatggatttagagggtcttacttcgccacttcgttgagtatgtgtttttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGACCGGGACAGGGGCAAAGATCGTCGCTACAGGGATTTGGATGTGGATCGAG
species | Physcomitrella patens |
transcript | PP1S58_254V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAG CGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACEST: gi|67573597|gb|BJ946421.1|BJ946421
genomic: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAGgtaattcgtc ... tttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGAC
EST: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAG CGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGACEST: gi|18362651|gb|BJ194722.1|BJ194722
genomic: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAGgtaattcgtc ... tttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGAC
EST: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAG CGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGACEST: gi|100452228|gb|CJ975165.1|CJ975165
genomic: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAGgtaattcgtc ... tttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGAC
EST: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACNTGAG CGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGAC
genomic: ACAATGGCGATTACGATTCCGCGGAGCGCAATGGCGAGAAGAGACGTGAGgtaattcgtc ... tttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGAC
atggatttagagggtcttacttcgccacttcgttgagtatgtgtttttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGACCGGGACAGGGGCAAAGATCGTCGCTACAGGGATTTGGATGTGGATCGAG
gtcttac putative branch site (score: 15)
tttttgtt putative PPT
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtccagttgcactagctacttctgcgtagacaccgcttggtcatggatttagagggtcttacttcgccacttcgttgagtatgtgtttttgttgcagCGTGCCTCTCGAGAATCTGACAGGAATGGAGAGAGCAGCCGAGACAGAGACCGGGACAGGGGCAAAGATCGTCGCTACAGGGATTTGGATGTGGATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG