1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttccagcgatttgtgagggaggatggagaggatggctttcctggttagggttgttctagcatgcaaagaatttgaagcattgatgtttgaaatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTTCGATGTTGTACAAGTGAAATATAACGATGAG
species | Physcomitrella patens |
transcript | PP1S58_197V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|208380031|gb|DC914581.1|DC914581
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|100407853|gb|BY955811.1|BY955811
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|208355357|gb|DC929804.1|DC929804
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|162155579|gb|FC331530.1|FC331530
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|67718012|gb|BJ968271.1|BJ968271
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|18357519|gb|BJ189578.1|BJ189578
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|67578657|gb|BJ950824.1|BJ950824
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|18371944|gb|BJ203546.1|BJ203546
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|18344030|gb|BJ176069.1|BJ176069
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|18348917|gb|BJ180966.1|BJ180966
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|100409673|gb|BY956049.1|BY956049
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|100435291|gb|BY979169.1|BY979169
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTEST: gi|100423150|gb|BY958171.1|BY958171
genomic: TCTCACGCTTGACCTCCGGCCCGGGGCGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
EST: CTCACGCTTGACCTCCGGCCCGGGGGCGG-TCTGGGTGCTTTCAATCTCG GAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
genomic: CTCACGCTTGACCTCCGGCCCGGGG-CGGGTCTGGGTGCTTTCAATCTCGgtaacaaatt ... aatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGT
tagggttgttctagcatgcaaagaatttgaagcattgatgtttgaaatgattcagGAATGCCGGTGTGTGAGGCCTTGGCGTACGTTCAGCAGCACAGGTCGTCGTTCGATGTTGTACAAGTGAAATATAACGATGAG
cattgat putative branch site (score: 10)
aaagaattt TA-rich tract