1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagttggtggtaatgtaggtgttttgatttatcgcgctcacgtatgtcagcctgagttttttattttttttatttatttttttctttcatggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTCCTTGTTCGCAGCAACTCCTTATCCATCAAGGCAAGGTGTTGAAAGATG
species | Physcomitrella patens |
transcript | PP1S58_148V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|162200956|gb|FC377359.1|FC377359
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTAAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|208368341|gb|DC935682.1|DC935682
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|100371545|gb|BY968032.1|BY968032
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67718144|gb|BJ968403.1|BJ968403
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67718550|gb|BJ968809.1|BJ968809
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67702167|gb|BJ962400.1|BJ962400
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|100369047|gb|BY984997.1|BY984997
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|100439827|gb|BY980259.1|BY980259
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|18342937|gb|BJ174973.1|BJ174973
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67716636|gb|BJ966896.1|BJ966896
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67718192|gb|BJ968451.1|BJ968451
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67702885|gb|BJ963118.1|BJ963118
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67703409|gb|BJ963642.1|BJ963642
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67702261|gb|BJ962494.1|BJ962494
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|162261438|gb|FC438274.1|FC438274
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|67717915|gb|BJ968174.1|BJ968174
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|100440952|gb|BY962440.1|BY962440
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|162150756|gb|FC327028.1|FC327028
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTAAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|208390566|gb|DC937498.1|DC937498
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|208389212|gb|DC933240.1|DC933240
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTEST: gi|18367483|gb|BJ199566.1|BJ199566
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
EST: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACG GTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
genomic: AGACGCTCAAGGGGAACCATTTCGATCTGGAAGTTAGTCCCGCGGATACGgtaaatcgtt ... ggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTT
gtcagcctgagttttttattttttttatttatttttttctttcatggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTCCTTGTTCGCAGCAACTCCTTATCCATCAAGGCAAGGTGTTGAAAGATG
ttttttatttttttta CT-rich tract
tgagttttttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttggtggtaatgtaggtgttttgatttatcgcgctcacgtatgtcagcctgagttttttattttttttatttatttttttctttcatggttgtacagGTCTTGAATGTTAAGAGACAGATAGAAGATTCACAGGGCAAGGAATCATTTCCTTGTTCGCAGCAACTCCTTATCCATCAAGGCAAGGTGTTGAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG