1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcccattatttatgcgcgcagaaacagaggctggttcctaaatttggtttcttctctttgagtgtcgtagaattgaagcgattgttgtggtgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGGCGAGGATGTCTATTCCACCAATCAACAGAAGGCCACGACCCACATTGA
species | Physcomitrella patens |
transcript | PP1S56_71V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGEST: gi|100417012|gb|BY993200.1|BY993200
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG AATTTCAACAGCGGGGAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGEST: gi|162158967|gb|FC333995.1|FC333995
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGEST: gi|100387894|gb|BY970639.1|BY970639
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
EST: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAG AATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
genomic: TGTGTCGACAGCACGGGGGATTTGCAGTTTGACGGACAGTAACAGAACAGgtctgatcct ... tgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGG
ggtttcttctctttgagtgtcgtagaattgaagcgattgttgtggtgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGGCGAGGATGTCTATTCCACCAATCAACAGAAGGCCACGACCCACATTGA
tagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccattatttatgcgcgcagaaacagaggctggttcctaaatttggtttcttctctttgagtgtcgtagaattgaagcgattgttgtggtgatctgtagAATTTCAACAGCGGGAAGGAATGGCTTGTGGAGAGGGACACGATCATGTGGGCGAGGATGTCTATTCCACCAATCAACAGAAGGCCACGACCCACATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG