Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208370311|gb|DC931723.1|DC931723EST: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAG CTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
genomic: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAGgtatttttct ... tgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
EST:
gi|100446340|gb|CJ970639.1|CJ970639EST: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAG CTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
genomic: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAGgtatttttct ... tgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
EST:
gi|162179233|gb|FC356738.1|FC356738EST: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAG CTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
genomic: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAGgtatttttct ... tgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
EST:
gi|208382158|gb|DC903132.1|DC903132EST: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAG CTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
genomic: GTCGTCTGCGCTAAGGGTAGCGACAATGGACCTCCTCGGCCTGAATACAGgtatttttct ... tgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagttgtgtctgagaatcattcttaagcatacgttgtccaccttttgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCGGATGTTTTTCTATGGCGCGTTTATGGCAAGTGGGGGTGTTGGTGGTCTG
tccacctttt CT-rich tract
ttttgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcagtttgtctggtccttttaaggtagtggatcatgggctaagttgtgtctgagaatcattcttaagcatacgttgtccaccttttgaattgcagCTCTGACGCAAAAATTCGAAGCGAGGTCATTGCCCCATTTCGTGCGCTTCGGATGTTTTTCTATGGCGCGTTTATGGCAAGTGGGGGTGTTGGTGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG