1 5' 3' | 2 5' 3' | 3 5' 3' |
...attttagtggattgcctctcttctgactttttcaatcttgtgcattcattaattcaaaacattcagcactctaagaattggttttcgttgtcaatcctagTGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTGAGCAATTCAGCATGCAGACTGAAGATGATAGCATACAGGAG
species | Physcomitrella patens |
transcript | PP1S55_251V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGGCACAGCTGGAGAATGACATCCTTGCTTGGTTCGTTCACTCCAAAG TGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTGEST: gi|162241885|gb|FC418140.1|FC418140
genomic: GGCGGCACAGCTGGAGAATGACATCCTTGCTTGGTTCGTTCACTCCAAAGgtactacttg ... tcaatcctagTGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTG
EST: GGCGGCACAGCTGGAGAATGACATCCTTGCTTGGTTCGTTCACTCCAAAG TGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTG
genomic: GGCGGCACAGCTGGAGAATGACATCCTTGCTTGGTTCGTTCACTCCAAAGgtactacttg ... tcaatcctagTGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTG
tcattaattcaaaacattcagcactctaagaattggttttcgttgtcaatcctagTGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTGAGCAATTCAGCATGCAGACTGAAGATGATAGCATACAGGAG
cattaat putative branch site (score: 2)
aattcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttagtggattgcctctcttctgactttttcaatcttgtgcattcattaattcaaaacattcagcactctaagaattggttttcgttgtcaatcctagTGAGACGATATATTGATGAATTGGAGGAGCTGTTGGATGACACCATGATTGAGCAATTCAGCATGCAGACTGAAGATGATAGCATACAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG