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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagccagagctgccgtatctttaatattattatttttatatacatgggtgtgtgttttgcttttgatggtatccttgttgaatcagATGTTGCAAAGTTTGCAAAATGGTCGAGGAAGCTCACAGACAGATCCACTCTGCCACAACAAATGGCCCTTCGAGAAAAATCGTCACAAAATGACTTGAG

Basic information

species Physcomitrella patens
transcript PP1S55_217V6.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttatatacatgggtgtgtgttttgcttttgatggtatccttgttgaatcagATGTTGCAAAGTTTGCAAAATGGTCGAGGAAGCTCACAGACAGATCCACTCTGCCACAACAAATGGCCCTTCGAGAAAAATCGTCACAAAATGACTTGAG
                             ttttgat  putative branch site (score: 4)
                                        tccttgtt  putative PPT
     tatatacat  TA-rich tract