1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggggtggtctcagcgtgatggttggtttctggaggcgtgtgtctttgtttcgtgagttgattgtgaatagggacatgaatttcgtggtattggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGTCCACAGAGCGGAGCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGA
species | Physcomitrella patens |
transcript | PP1S55_214V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACT GTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGEST: gi|18355793|gb|BJ187852.1|BJ187852
genomic: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACTgtaagtgatg ... tggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCG
EST: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACT GTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGEST: gi|208352906|gb|DC913832.1|DC913832
genomic: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACTgtaagtgatg ... tggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCG
EST: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACT GTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGEST: gi|208388648|gb|DC941489.1|DC941489
genomic: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACTgtaagtgatg ... tggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCG
EST: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACT GTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCG
genomic: TGTCAGCGTCGGATCCATTCTACCTCGTCAAAGACGAGATTCAGGACACTgtaagtgatg ... tggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCG
tgtttcgtgagttgattgtgaatagggacatgaatttcgtggtattggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGTCCACAGAGCGGAGCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGA
agttgat putative branch site (score: 15)
atgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggtggtctcagcgtgatggttggtttctggaggcgtgtgtctttgtttcgtgagttgattgtgaatagggacatgaatttcgtggtattggcgtgtagGTCACGAAGCTGCTCTCTACGTTGGTTCGATGGGAGAAGTTACCGACTTCGTCCACAGAGCGGAGCGTGATTGGAGGGGAGATGCTATCCAGCTGTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG