1 5' 3' | 2 5' 3' | 3 5' 3' |
...gattcgaacgggatgtttttttctttgatatatgtaggtggtatggtgttgattctgtataatattctgagatgactgagtttcctgtatttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTCTTCAGCTGTCTTCCAACGAAAAACCAAATGTACACGTACAGAGAGAGCG
species | Physcomitrella patens |
transcript | PP1S55_210V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGCGCGGGCGGGATTGGTTTAGGTGGCATCTTTCATGGAGCTGTGGAG GTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGEST: gi|100382234|gb|BY969052.1|BY969052
genomic: TATGCGCGGT-GGGATTGGTTTAGGTGGCATCTTTCATGGAGCTGTGGAGgttagccttt ... ttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTG
EST: AGGTGGCATCTTTCATGGAGCTGTGGAG GTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTCEST: gi|100380590|gb|BY986724.1|BY986724
genomic: AGGTGGCATCTTTCATGGAGCTGTGGAGgttagccttt ... ttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTC
EST: TTATGCGCGGTGGGATTGGTTTAGGTGGCATCTTTCATGGAGCTGTGGAG GTTGATGGAAAGGAATGGTCGTTTGGGTATTGTGAGATTGGGAGTGGAGTC
genomic: TTATGCGCGGTGGGATTGGTTTAGGTGGCATCTTTCATGGAGCTGTGGAGgttagccttt ... ttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTC
gtgttgattctgtataatattctgagatgactgagtttcctgtatttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTCTTCAGCTGTCTTCCAACGAAAAACCAAATGTACACGTACAGAGAGAGCG
tgttgat putative branch site (score: 4)
attctgtataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattcgaacgggatgtttttttctttgatatatgtaggtggtatggtgttgattctgtataatattctgagatgactgagtttcctgtatttgctgatagGTTGATGGAAAGGAATGGTCGTTTGGTTATTGTGAGATTGGGAGTGGAGTCTTCAGCTGTCTTCCAACGAAAAACCAAATGTACACGTACAGAGAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG