1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gggaggatttaaaattgggagatataattttatttttattcgagaatggaatgattgagtagacgacactggcgtttggttttggttgtgatcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGATCTCTGAGGAAG
species | Physcomitrella patens |
transcript | PP1S55_207V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18358745|gb|BJ190804.1|BJ190804
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18349447|gb|BJ181496.1|BJ181496
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18366305|gb|BJ198384.1|BJ198384
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18355435|gb|BJ187494.1|BJ187494
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18363472|gb|BJ195544.1|BJ195544
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGAEST: gi|18355878|gb|BJ187937.1|BJ187937
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
EST: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGG GGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
genomic: TCTGTGGCAGTGCGATCGCCAACCACTACCGGGTGTTGTGCCTCGTTAGGgtacgcacat ... atcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaggatttaaaattgggagatataattttatttttattcgagaatggaatgattgagtagacgacactggcgtttggttttggttgtgatcacggcagGGTGCGTGTGAAGCATAGAACGAAGCCTCTTGGTTTGTGAAGTTTCGAAGATCTCTGAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA