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...taaattcattttcatgattttataaatatgattttatttgaagtaacaaaacttttatacaagtaaaatttaagcagagttttgctcggactccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGAGAGTCCTAGGAGACGAAACAATAG
species | Physcomitrella patens |
transcript | PP1S55_141V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGEST: gi|208345632|gb|DC909302.1|DC909302
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTG
EST: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGEST: gi|100403940|gb|BY955175.1|BY955175
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG CCTGGCGACGTGNCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGEST: gi|162185292|gb|FC360866.1|FC360866
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGEST: gi|100393119|gb|BY989753.1|BY989753
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
EST: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAG CCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
genomic: GTGACAAGGGAAAACCTATACATTACGTTGTGGCCAGCCAAGACTTGCAGgtgactgata ... ctccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAG
acaaaacttttatacaagtaaaatttaagcagagttttgctcggactccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGAGAGTCCTAGGAGACGAAACAATAG
aagtaac putative branch site (score: 2)
ctccttgc putative PPT
acttttatacaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattcattttcatgattttataaatatgattttatttgaagtaacaaaacttttatacaagtaaaatttaagcagagttttgctcggactccttgcagCCTGGCGACGTGGCATTAACCGTCCCCAAGTCCCTTGTCGTCACATTGGAGAGAGTCCTAGGAGACGAAACAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA