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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctcttttttcttgatgttttactctcaattcttggtatgtggtttctggttgcgttaagttcgcattggtcgctagattcctgtagttgaattcattcctgcggccctgaaaggagagtgttaaaatgtctggtgcgggtctgtttcttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTGGGAGCCGCTGTTGGGTCTGCCTCATTTGATGTTGTCTTGGACAACAATG

Basic information

species Physcomitrella patens
transcript PP1S55_140V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18331788|gb|BJ163799.1|BJ163799
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAG
EST: gi|162175107|gb|FC351981.1|FC351981
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162186937|gb|FC362615.1|FC362615
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162150552|gb|FC326408.1|FC326408
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162247002|gb|FC423944.1|FC423944
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100386664|gb|BY970205.1|BY970205
EST:     TGAAGAATTATCNTGACA-GATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: TGAAGAATTATC-TGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|208348027|gb|DC905350.1|DC905350
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162185076|gb|FC362210.1|FC362210
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|18325762|gb|BJ157759.1|BJ157759
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGAC
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGAC
EST: gi|162279423|gb|FC455539.1|FC455539
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162164969|gb|FC342160.1|FC342160
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162189219|gb|FC366728.1|FC366728
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162198728|gb|FC374835.1|FC374835
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100414101|gb|BY975081.1|BY975081
EST:     TGAAGAATTATCTGAACA-GATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: TGAAGAATTATCTGA-CAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162246117|gb|FC423579.1|FC423579
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100435026|gb|BY979057.1|BY979057
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162238804|gb|FC415046.1|FC415046
EST:     TGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: TGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|18328652|gb|BJ160657.1|BJ160657
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100353739|gb|BY983286.1|BY983286
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162225654|gb|FC401796.1|FC401796
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162155054|gb|FC330848.1|FC330848
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100397200|gb|BY972380.1|BY972380
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100447062|gb|CJ971361.1|CJ971361
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|208363799|gb|DC943256.1|DC943256
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162190931|gb|FC368129.1|FC368129
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162183537|gb|FC359011.1|FC359011
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162168974|gb|FC345656.1|FC345656
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162251375|gb|FC427991.1|FC427991
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162156245|gb|FC332061.1|FC332061
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100395950|gb|BY972208.1|BY972208
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162160093|gb|FC335963.1|FC335963
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162179836|gb|FC355907.1|FC355907
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162225382|gb|FC400874.1|FC400874
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|19782751|gb|BQ039905.1|BQ039905
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162240364|gb|FC419102.1|FC419102
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162184339|gb|FC359722.1|FC359722
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162180785|gb|FC358286.1|FC358286
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162164542|gb|FC341837.1|FC341837
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162181815|gb|FC357414.1|FC357414
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100436583|gb|BY961290.1|BY961290
EST:     GTGAAGA-TTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGAC
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGAC
EST: gi|162164112|gb|FC340388.1|FC340388
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100439293|gb|BY980191.1|BY980191
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCGGACTNG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162241056|gb|FC414113.1|FC414113
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162155303|gb|FC331227.1|FC331227
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162218665|gb|FC394631.1|FC394631
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|208357639|gb|DC934105.1|DC934105
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGTAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162196302|gb|FC373019.1|FC373019
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|100379068|gb|BY986558.1|BY986558
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|6167062|gb|AW145381.1|AW145381
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162190253|gb|FC366411.1|FC366411
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162206313|gb|FC382591.1|FC382591
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|208371564|gb|DC936285.1|DC936285
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAGATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCNACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
EST: gi|162250824|gb|FC426868.1|FC426868
EST:     GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAAT                         GAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG
genomic: GTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 60

CGCCAAGGACTTAGTTGACGCTGGTCACAGCGTCACGATTCTGACCGTGGGTGAAGAATTATCTGACAAGATGAAGAAGCAGCCCTTCTCTCGGTTCAATgtaatctctt ... cttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTGGGAGCCGCTGTTGGGTCTGCCTCATTTGATGTTGTCTTGGACAACAATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggccctgaaaggagagtgttaaaatgtctggtgcgggtctgtttcttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTGGGAGCCGCTGTTGGGTCTGCCTCATTTGATGTTGTCTTGGACAACAATG
                                      tctgtttctt  CT-rich tract
                 tgttaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatctcttttttcttgatgttttactctcaattcttggtatgtggtttctggttgcgttaagttcgcattggtcgctagattcctgtagttgaattcattcctgcggccctgaaaggagagtgttaaaatgtctggtgcgggtctgtttcttatggcagGAGCTTCGTGAAATTGGAGTCGAGACCGTGTGGGGTGAGCCTTCCGACTTGGGAGCCGCTGTTGGGTCTGCCTCATTTGATGTTGTCTTGGACAACAATG

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