1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttattttatttattgttgttgttgttgttgtggttattttttttgttctgtttttttttgaagaatcttactgtaatggatcactcggtttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTATTGTCGACAACAAACTTTTTAATCGGGGTGACCGCGTTGCTGTCGCTG
species | Physcomitrella patens |
transcript | PP1S54_267V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|100385874|gb|BY951068.1|BY951068
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|100425875|gb|BY977164.1|BY977164
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAAAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|208386768|gb|DC937160.1|DC937160
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|100379791|gb|BY949946.1|BY949946
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|18342250|gb|BJ174285.1|BJ174285
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|162160669|gb|FC337205.1|FC337205
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTEST: gi|208358391|gb|DC943222.1|DC943222
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
EST: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAG GTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
genomic: TTTGCAAGGCAAAGCGTGCTGCCCTGGTCCGGCCCAGAAACCGACAACAGgtatgcaaaa ... tttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACT
tgttctgtttttttttgaagaatcttactgtaatggatcactcggtttggtgcagGTTTGTAAAGACTGCTTCTACACTGCTTTTGAGGAGGAGATCCATCAAACTATTGTCGACAACAAACTTTTTAATCGGGGTGACCGCGTTGCTGTCGCTG
atcttac putative branch site (score: 10)
tttttttttgaagaat TA-rich tract