1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcatcatggtgtgatggttgacgaacggaagtcgcagcgaaggatgttgaagggcagattgtacttgatcttttcttaaaagttcgttttgatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACAAAGGATGAAGTTAATAAGTATCAGCAGCATGCTGTGTATCTTCAAAGA
species | Physcomitrella patens |
transcript | PP1S54_263V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAG GCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACEST: gi|162170924|gb|FC346615.1|FC346615
genomic: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAGgtgatttatg ... gatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCAC
EST: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAG GCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACEST: gi|162256041|gb|FC431214.1|FC431214
genomic: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAGgtgatttatg ... gatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCAC
EST: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAG GCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACEST: gi|162184993|gb|FC362439.1|FC362439
genomic: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAGgtgatttatg ... gatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCAC
EST: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAG GCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCAC
genomic: AATATTTCTCCTTCAGAAGGCAGGTTTATTGCAAAAGGTTTCAGTGCCAGgtgatttatg ... gatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCAC
gttgaagggcagattgtacttgatcttttcttaaaagttcgttttgatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACAAAGGATGAAGTTAATAAGTATCAGCAGCATGCTGTGTATCTTCAAAGA
ttttgat putative branch site (score: 18)
atcttttcttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcatggtgtgatggttgacgaacggaagtcgcagcgaaggatgttgaagggcagattgtacttgatcttttcttaaaagttcgttttgatatttcagGCAACTTGCTTTGGCAACAGCAGGCGTCCCTTTATTTGAGGTGTATGTCACAAAGGATGAAGTTAATAAGTATCAGCAGCATGCTGTGTATCTTCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - tgttgaa