1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagtgaacagagaacctcgtgtttgttgaatactctggttaggttacaattatacgtttgtttgagttcatctaggatttgcgattgcgcacttcgttgctaggtatttgcaccgatctcttgatgtagttatctaacctgttcaattttacgatgaatagAGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTGAAGAAGGACAACGTCGCTCTTTACGTTAAG
species | Physcomitrella patens |
transcript | PP1S540_7V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCGATGAATACGTAACGTTCCAATGATATTGTCATGGAGATCTGGGCAT AGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTGEST: gi|100361559|gb|BY984067.1|BY984067
genomic: ATCGATGAATACGTAACGTTCCAATGATATTGTCATGGAGATCTGGGCATgtagtgaaca ... cgatgaatagAGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTG
EST: ATCGATGAATACGTAACGTTCCAATGATATTGTCATGGAGATCTGGGCAT AGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTG
genomic: ATCGATGAATACGTAACGTTCCAATGATATTGTCATGGAGATCTGGGCATgtagtgaaca ... cgatgaatagAGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTG
tttgcaccgatctcttgatgtagttatctaacctgttcaattttacgatgaatagAGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTGAAGAAGGACAACGTCGCTCTTTACGTTAAG
atctaac putative branch site (score: 2)
ttcaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgaacagagaacctcgtgtttgttgaatactctggttaggttacaattatacgtttgtttgagttcatctaggatttgcgattgcgcacttcgttgctaggtatttgcaccgatctcttgatgtagttatctaacctgttcaattttacgatgaatagAGTGGCGTTACGCAGAAGTTCTCTGGCCTTAGGGTTGCCGCTTTCCCTCTGAAGAAGGACAACGTCGCTCTTTACGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG