Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcggttgttagaatgcctctgctaatatattgtgcgattattttgtgttaattttttttttatcagtatgcatcagccgtgttatccttcgttggcagATTGACCTTACGGGCGGGTATTATGATGCTGGCGACAATGTGAAGTACGGACTTCCCATGGCATTCACCATCACCATGCTCTCCTGGAATGTCATTCAGT

Basic information

species Physcomitrella patens
transcript PP1S53_97V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S53_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gatcg--gttgttagaatgcctctgctaatatattgtgcgattattttgtgttaattttttttttatcagtatgcatcagccgtgt----tatccttcg---ttggcagATTGACCTTACGGGCGGGTATTATGATGCTGGCGACAATGTGAAGTACGGACTTCCCATGGCATTCACCATCACCATGCTCTCCTGGAATGTCATTCAGT
                       ||    ||  |  || |||  |  |   | |     | |||||  |    | |||   |       | | ||    ||   | |    ||  ||| |   |  | || | || ||   ||| || ||||||||||| || |||||||||||||  || || ||||||||||||||| | || ||| | || ||||   |  |  |||
gtaagttcattttccactccaactcaaaatttctgaaaagcccattgtggaaca--agacaattataattgaattattccatacaaccaaatgtgttgaagttttttgctataatctttgagttatgtagGTGGATCTGGTGGGAGGATATTATGATGCAGGTGACAATGTGAAGTTTGGCCTACCCATGGCATTCACCGTTACAATGATGTCATGGAGCATAGTGGAGT

upper sequence: PP1S53_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ12750 (Selaginella moellendorffii), 3'ss of exon 1
------gatcggttgttagaatgcctctgctaatatattgtgcgattattttgtgttaattttttttttatcagtatgcatcagccgtgttatccttcgttggcagATTGACCTTACGGGCGGGTATTATGATGCTGGCGACAATGTGAAGTACGGACTTCCCATGGCATTCACCATCACCATGCTCTCCTGGAATGTCATTCAGT
          |  |   || ||  || | |   |    |||||  ||     |  || | |  |||    |  ||    ||     |||    |      |  ||| | ||  |    || |||||||| || || ||||||||||| ||||  || || |||||||| ||||||||||||||| | || ||||  | |||  |||
atagatagctgcattcgaggatatctttccctttcggatgtgcctttgc---gaattgagtactttgcgtt--gtggtgattgatggtggcg-ctggaactaccagGTGGATTTGGTTGGAGGGTATTACGACGCGGGCGACAATGTCAAGTTTGGCCTGCCCATGGCCTTCACCATCACCATGATGTCGTGGAGCGCCATCGAGT

upper sequence: PP1S53_97V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ13916 (Selaginella moellendorffii), 3'ss of exon 1
------gatcggttgttagaatgcctctgctaatatattgtgcgattattttgtgttaattttttttttatcagtatgcatcagccgtgttatccttcgttggcagATTGACCTTACGGGCGGGTATTATGATGCTGGCGACAATGTGAAGTACGGACTTCCCATGGCATTCACCATCACCATGCTCTCCTGGAATGTCATTCAGT
          |  |  ||| ||  || | |   |    |||||  ||     |  || | |  |||    |  ||    ||     |||    |      |  ||| | ||  |    || |||||||| || || ||||||||||| ||||  || || |||||||| ||||||||||||||| | || ||||  | |||  |||
gtagatagctgcattctaggatatctttccctttcggatgtgcctttgc---gaattgagtactttgcgtt--gtggtgattgatggtggcg-ctggaactaccagGTGGATTTGGTTGGAGGGTATTACGACGCGGGCGACAATGTCAAGTTTGGTCTGCCCATGGCCTTCACCATCACCATGATGTCGTGGAGCGCCATCGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttaattttttttttatcagtatgcatcagccgtgttatccttcgttggcagATTGACCTTACGGGCGGGTATTATGATGCTGGCGACAATGTGAAGTACGGACTTCCCATGGCATTCACCATCACCATGCTCTCCTGGAATGTCATTCAGT
  tgttaat  putative branch site (score: 3)
                                      ttatccttc  putative PPT
     taattttttttttatc  TA-rich tract