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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtgtttcatagtagtgcttggaccgtctaatacccgccggaattagttgaagcgtggttcggttctctaacgaaaattatgactgcatgcatcatcagGGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTACTTTTTTTTTTACTGATTTTCTTATTTCCGACCCTATCGAA

Basic information

species Physcomitrella patens
transcript PP1S52_233V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100352737|gb|BY945423.1|BY945423
EST:     GTCGGTCCTACTCGGATTTTGTTGGAGATTCGCGGACGATTGCCTGCGAG                         GGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTAC-NNNNNNN
genomic: GTCGGTCCTACTCGGATTTTGTTGGAGATTCGCGGACGATTGCCTGCGAGgtgaatttta ... gcatcatcagGGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTACTTTTTTTT
EST: gi|100396779|gb|BY953823.1|BY953823
EST:     GTCGGTCCTACTCGGATTTTGTTGGAGATTCGCGGACGATTGCCTGCGAG                         GGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTACNNNNNNNN
genomic: GTCGGTCCTACTCGGATTTTGTTGGAGATTCGCGGACGATTGCCTGCGAGgtgaatttta ... gcatcatcagGGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTACTTTTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgaagcgtggttcggttctctaacgaaaattatgactgcatgcatcatcagGGTTAGAGGGCTCTCGGAGTTGCAAGCAGCAGAAGTTCTTTACTTTTTTTTTTACTGATTTTCTTATTTCCGACCCTATCGAA
                     ctctaac  putative branch site (score: 2)
                             aaaattatga  TA-rich tract