1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaattttggttttggaactattaggtccacttgaaaagccccgcgggttttaggggctatgatgtcacggcgcctctcatagatgaggtggtgtatgcagGAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTTGCCACTACTCCGATCATGAGACAGAAGCACCTCATTTGGGTCACAACTC
species | Physcomitrella patens |
transcript | PP1S4_409V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAG GAAGTAGCATGTAATCATGCTCAAAGCGEST: gi|100392264|gb|BY953276.1|BY953276
genomic: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAGgcttgtgtgc ... gtgtatgcagGAAGTAGCATGTAATCATGCTCAAAGCG
EST: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAG GAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTTEST: gi|100365042|gb|BY966781.1|BY966781
genomic: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAGgcttgtgtgc ... gtgtatgcagGAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTT
EST: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAG GAAGTAGCATGTAATCATGCTCAAAGEST: gi|162279761|gb|FC455669.1|FC455669
genomic: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAGgcttgtgtgc ... gtgtatgcagGAAGTAGCATGTAATCATGCTCAAAG
EST: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAG GAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTT
genomic: TTGGGACGAATCGCGCTGCTTCGATGGAGACGATTGCGAATCTCTTGCAGgcttgtgtgc ... gtgtatgcagGAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattttggttttggaactattaggtccacttgaaaagccccgcgggttttaggggctatgatgtcacggcgcctctcatagatgaggtggtgtatgcagGAAGTAGCATGTAATCATGCTCAAAGCGTGGGGTTTTCAACAGACGGTTTTGCCACTACTCCGATCATGAGACAGAAGCACCTCATTTGGGTCACAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC