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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgacaattgcaatctgaacttagagttcttttttaatcttcgcttgtgtactgccttcctccgtatggacatgaagataaaaagaatgcgtggagcagttgggagggtctcttttaagatttggatttcaaagcagccttaggattcggttaccaagtaagactcatgacttgttcattaaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGACCCAGCCGGACATGAAAGGACAGATAATCGAACGCAGGCGGTGTGTAAA

Basic information

species Physcomitrella patens
transcript PP1S4_166V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18364202|gb|BJ196275.1|BJ196275
EST:     TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT                         ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
EST: gi|162150222|gb|FC326307.1|FC326307
EST:     TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT                         ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
EST: gi|18361263|gb|BJ193328.1|BJ193328
EST:     TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGT                         ATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA
genomic: TTGGAAGCTGAAGAGCAAGTGCGAAGCCGTTAGAGAATATCTGAGGACGTgtgagttgac ... taaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagccttaggattcggttaccaagtaagactcatgacttgttcattaaatttcagATCACGGGAGTAAAATTGAGAGGTATCTTCACATCACTTAAGGATGCCGGACCCAGCCGGACATGAAAGGACAGATAATCGAACGCAGGCGGTGTGTAAA
                                     ttgttcattaaattt  TA-rich tract