1 5' 3' |
...tgcccacggtactagccagactgctgctacatggaaaaacaaatttcgttcgttcgagagtttttatactcttgtatgtgactgtaatatgcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCGATTTCTGATCAAG
species | Physcomitrella patens |
transcript | PP1S49_57V6.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG GCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGCEST: gi|208353096|gb|DC910147.1|DC910147
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... gcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGC
EST: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG GCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGCEST: gi|100401483|gb|BY991025.1|BY991025
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... gcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGC
EST: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCG GCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGC
genomic: TTCTACTCTTTTAGAGGCGGACGTTCCTGCATGCCGCAATTTCATATTCGgtaaggtctg ... gcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGC
tcgttcgttcgagagtttttatactcttgtatgtgactgtaatatgcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCGATTTCTGATCAAG
agtttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccacggtactagccagactgctgctacatggaaaaacaaatttcgttcgttcgagagtttttatactcttgtatgtgactgtaatatgcatgtgcagGCATGACATTCTGTTGACTTTCCTGGCCATCTGCAGGTTTCGAGAACAAGCACAGCTTCTTTCGTACGGGCGTATTCCTCCTCAGCGATTTCTGATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - -tgctgct