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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtttctttaagcttcagtctgagtatatggagccttactcggggcgaaagggttgaaattgctttttgtcctcaggaatgtgattgctttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCAAATTGCGTCTGATGTGGGTAACTTGGATTCCATTAGGTAACAGCGAGAG

Basic information

species Physcomitrella patens
transcript PP1S49_283V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67704241|gb|BJ964474.1|BJ964474
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|100440317|gb|BY962172.1|BY962172
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|100436892|gb|BY979578.1|BY979578
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|18347737|gb|BJ179784.1|BJ179784
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|162273013|gb|FC449144.1|FC449144
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|18353733|gb|BJ185788.1|BJ185788
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
EST: gi|18355523|gb|BJ187582.1|BJ187582
EST:     TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAG                         CATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA
genomic: TATTGTGAGTTCTACCTGCAGCGGGCCCTGCTCAGGCGGGTCAGAACGAGgtaagccagt ... ttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgaaagggttgaaattgctttttgtcctcaggaatgtgattgctttggttgcagCATCGACTGATTGTCAGGGTGTATGTCATCCTTTTCGTTCGGGGAAGCTCAAATTGCGTCTGATGTGGGTAACTTGGATTCCATTAGGTAACAGCGAGAG
                                        ttgcttt  CT-rich tract
         ttgaaatt  TA-rich tract