Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaggctttggattttgctagggtgaggggaagtggtcagcagagctgaaagtcttcttttttacatggtgtggctatctttttctgtgtgcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTTGTAGTTCACAGTCTTCAGCCGTGTATAGTGAATTGATTAGAATCGTTAT

Basic information

species Physcomitrella patens
transcript PP1S49_273V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100447540|gb|CJ971839.1|CJ971839
EST:     ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG                         ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
EST: gi|100451386|gb|CJ974739.1|CJ974739
EST:     ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG                         ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
EST: gi|67570697|gb|BJ943521.1|BJ943521
EST:     ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAG                         ATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT
genomic: ACACCATCAAGGAACTCTTGATCGTCGAAGAAGAGCAGCGACTGTTTGAGgtagggcgag ... gcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaagtcttcttttttacatggtgtggctatctttttctgtgtgcttgttcagATTCGTGCACCTTGGCTGAAACTCACAGTGCTCCACTCGAACCAGCGGTTTGTAGTTCACAGTCTTCAGCCGTGTATAGTGAATTGATTAGAATCGTTAT
                                              cttgttc  CT-rich tract
         ttctttttta  TA-rich tract