1 5' 3' | 2 5' 3' | 3 5' 3' |
...accctcaatttgggtttcggaatttgcttaggtaggtggtaagtttttgttggttggtgagaaagttgcgcgcagtcttagggttttcttggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTCGAATCCAGAGTGGGATGCGGAAAAGAGGCCTAAAATGGGGGAAGACGG
species | Physcomitrella patens |
transcript | PP1S49_263V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18371387|gb|BJ202989.1|BJ202989
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|100443698|gb|BY963795.1|BY963795
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18364516|gb|BJ196589.1|BJ196589
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18375309|gb|BJ206887.1|BJ206887
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18348290|gb|BJ180337.1|BJ180337
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|67712572|gb|BJ966021.1|BJ966021
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18371459|gb|BJ203061.1|BJ203061
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|162151107|gb|FC327639.1|FC327639
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: CCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18365107|gb|BJ197181.1|BJ197181
genomic: CCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|67716577|gb|BJ966837.1|BJ966837
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTEST: gi|18368549|gb|BJ200634.1|BJ200634
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
EST: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAG GCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
genomic: GCCACCACCCTCTCTCACGTCTCGTGGAGGCCTTCTCGTTGCAATTTGAGgttcgcagtc ... ggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGT
tttgttggttggtgagaaagttgcgcgcagtcttagggttttcttggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTCGAATCCAGAGTGGGATGCGGAAAAGAGGCCTAAAATGGGGGAAGACGG
ttttcttggttttcc CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accctcaatttgggtttcggaatttgcttaggtaggtggtaagtttttgttggttggtgagaaagttgcgcgcagtcttagggttttcttggttttccagGCACAGGCGGAAAAATGGCAACGCGTCACGAGACAACGAGCAGTCGGTTGTCGAATCCAGAGTGGGATGCGGAAAAGAGGCCTAAAATGGGGGAAGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA