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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtttccgtgacaatgaaaactttagctatagtatatttttgaagctgaacatgacagttcgaaatattcctagccttacggagcaaggcttgtgcagGGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTAATGCAGCGACAGCGACACTTACCTTTCATGATTTTTTGGATCGGATGCG

Basic information

species Physcomitrella patens
transcript PP1S49_250V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18369236|gb|BJ201321.1|BJ201321
EST:     TTTGGTTTTTCCCTTTCTAGANATCCCATCTCTCGATTGGATCAATTTAN                         GGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA
genomic: TTTGGTTTTTCCCTTTCTAGAGATCCCATCTCTCGATTGGATCAATTTAGgttaggacga ... gcttgtgcagGGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA
EST: gi|18359071|gb|BJ191131.1|BJ191131
EST:     TTTGGTTTTTCCCTTTCTAGAGATCCCATCTCTCGATTGGATCAATTTAG                         GGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA
genomic: TTTGGTTTTTCCCTTTCTAGAGATCCCATCTCTCGATTGGATCAATTTAGgttaggacga ... gcttgtgcagGGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA
EST: gi|18368261|gb|BJ200346.1|BJ200346
EST:     TTTGGTTTTTCCCTTTCTAGAGATCCCATCTCTCGATTGGATCAATTTAG                         GGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA
genomic: TTTGGTTTTTCCCTTTCTAGAGATCCCATCTCTCGATTGGATCAATTTAGgttaggacga ... gcttgtgcagGGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgaacatgacagttcgaaatattcctagccttacggagcaaggcttgtgcagGGCTTCAGAAAGCATACCAATAAGGTACAATGGAGAACGTTGATATGTTTAATGCAGCGACAGCGACACTTACCTTTCATGATTTTTTGGATCGGATGCG
                              gccttac  putative branch site (score: 3)
                   aaatatt  TA-rich tract