1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
species | Physcomitrella patens |
transcript | PP1S49_242V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100438705|gb|BY961760.1|BY961760
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100416828|gb|BY993109.1|BY993109
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208383578|gb|DC903535.1|DC903535
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|67570622|gb|BJ943446.1|BJ943446
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18327864|gb|BJ159868.1|BJ159868
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208400191|gb|DC908852.1|DC908852
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100443529|gb|BY981956.1|BY981956
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|162213606|gb|FC389686.1|FC389686
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18371195|gb|BJ202797.1|BJ202797
genomic: CAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100398885|gb|BY990564.1|BY990564
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|67572941|gb|BJ945765.1|BJ945765
genomic: AGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100385646|gb|BY987711.1|BY987711
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18355332|gb|BJ187391.1|BJ187391
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|162205337|gb|FC382046.1|FC382046
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100391786|gb|BY989552.1|BY989552
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100436316|gb|BY961156.1|BY961156
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18327075|gb|BJ159076.1|BJ159076
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100429286|gb|BY978034.1|BY978034
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18364005|gb|BJ196078.1|BJ196078
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208384750|gb|DC915283.1|DC915283
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100366216|gb|BY967337.1|BY967337
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100428415|gb|BY977794.1|BY977794
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100424686|gb|BY976764.1|BY976764
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|67574720|gb|BJ947544.1|BJ947544
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100382784|gb|BY986928.1|BY986928
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGGGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208378626|gb|DC903657.1|DC903657
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208347007|gb|DC901842.1|DC901842
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18365731|gb|BJ197808.1|BJ197808
genomic: AGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100397637|gb|BY990326.1|BY990326
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100428972|gb|BY959526.1|BY959526
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100444892|gb|BY982720.1|BY982720
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18372050|gb|BJ203652.1|BJ203652
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100370396|gb|BY985389.1|BY985389
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100432373|gb|BY960452.1|BY960452
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: GTTGCGGACAGCGNGAGAGGCTTCGNNCGTAGAGGGTCCTTCTCTGCTNG GGTGATTTAGNAGAACGAAAACAAGGACTCATGGGCGGACGAAAGAGATCEST: gi|208385161|gb|DC911393.1|DC911393
genomic: GTTGCGGACAGCG-GAGAGGCTTCG--CGTAGAGGGT-CTTCTCTGCT-Ggtgcgcgacg ... tgtgatttagGGTGATTTAG-AGAACGAAAACAAGGACTCAT-GGCGGACGAAAGAGATC
EST: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
genomic: TTGTAGTTGCGGACAGCGGAGAGGCTTCGCGTAGAGGGTCTTCTCTGCTGgtgcgcgacg ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
tctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
cgtttttcct CT-rich tract
atcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT