1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
species | Physcomitrella patens |
transcript | PP1S49_242V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTATGANAACGAAAACAAGGACTCATGGCGGACGAAAGATATCGAEST: gi|208357796|gb|DC902320.1|DC902320
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTA-GAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGA
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100388219|gb|BY951821.1|BY951821
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100389401|gb|BY988879.1|BY988879
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100445565|gb|CJ975714.1|CJ975714
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100403101|gb|BY973507.1|BY973507
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100419959|gb|BY975908.1|BY975908
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18374187|gb|BJ205765.1|BJ205765
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18371686|gb|BJ203288.1|BJ203288
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTATGAGAACGAAAACAAGGACTCATGGCGGACGAAAGANATCGAEST: gi|18365316|gb|BJ197390.1|BJ197390
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTA-GAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGA
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208355737|gb|DC910531.1|DC910531
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
genomic: CCTGGAGTCTTAATCGAACGGAGATTGCTTGTTCAGCATCGGAATTCTCGgtaccttttt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
tctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
cgtttttcct CT-rich tract
atcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT