1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
species | Physcomitrella patens |
transcript | PP1S49_242V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100412068|gb|BY956399.1|BY956399
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208377887|gb|DC906872.1|DC906872
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100416246|gb|BY957147.1|BY957147
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100377127|gb|BY968376.1|BY968376
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100402538|gb|BY954885.1|BY954885
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208397727|gb|DC911978.1|DC911978
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18365027|gb|BJ197101.1|BJ197101
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208379516|gb|DC911127.1|DC911127
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100370459|gb|BY985420.1|BY985420
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208376134|gb|DC914475.1|DC914475
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100398045|gb|BY954060.1|BY954060
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100412900|gb|BY992491.1|BY992491
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|208345627|gb|DC909297.1|DC909297
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100449819|gb|CJ973952.1|CJ973952
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100413259|gb|BY956585.1|BY956585
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100385815|gb|BY951009.1|BY951009
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18374503|gb|BJ206081.1|BJ206081
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100449979|gb|CJ974033.1|CJ974033
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|162174478|gb|FC350757.1|FC350757
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|100364273|gb|BY984530.1|BY984530
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGEST: gi|18366359|gb|BJ198438.1|BJ198438
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
EST: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAG GGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
genomic: AGTCTTGTGATTGTGACTGAGATGGTTGGCGGTTTTCTCTGAGTCTTCAGgttagtgagt ... tgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAG
tctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
cgtttttcct CT-rich tract
atcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagacccatgccaggatttgattctggacctatatctggatttctctgcaattgcgagtagagtccatcaaaactgaacacgtttttcctgtgatttagGGTGATTTAGAGAACGAAAACAAGGACTCATGGCGGACGAAAGAGATCGAGAAGTTGCCGAGCTGGAGGAAAATGTTAGAGAAGTGACGATTAATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT