1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggagatcgagcgtggcagttcataacaaccagtctcctcataaaattttctaatgctccgtttgtatgaaccgtctattgatttctgctctctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGGTTGGGTTTAAGAGGTGGTGCGGTAGCCCTGCTACTCCTGGCGTTCTTC
species | Physcomitrella patens |
transcript | PP1S49_22V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18371599|gb|BJ203201.1|BJ203201
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18374356|gb|BJ205934.1|BJ205934
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18360519|gb|BJ192582.1|BJ192582
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: AGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18375421|gb|BJ206999.1|BJ206999
genomic: AGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18366890|gb|BJ198970.1|BJ198970
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18364128|gb|BJ196201.1|BJ196201
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18365083|gb|BJ197157.1|BJ197157
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGEST: gi|18365314|gb|BJ197388.1|BJ197388
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
EST: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAG TTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
genomic: TGGTGGAAAGGGGGCTGTCAGTTTGTCAACAGATTGCCGCTTCGATTCAGgtatgcatcc ... tctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGG
ttttctaatgctccgtttgtatgaaccgtctattgatttctgctctctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGGTTGGGTTTAAGAGGTGGTGCGGTAGCCCTGCTACTCCTGGCGTTCTTC
tttctgctctct CT-rich tract
tattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagatcgagcgtggcagttcataacaaccagtctcctcataaaattttctaatgctccgtttgtatgaaccgtctattgatttctgctctctgatgcagTTCGCCATGATTTCCTCGGCGTGAAGTTTCGTCAGCAACTATGTCTACAGGGTTGGGTTTAAGAGGTGGTGCGGTAGCCCTGCTACTCCTGGCGTTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG