Sequence
atgc intronic sequence ATGC exonic sequence...gaattttgcgttgttctgagttttacaattgaaacttttgagcattccagatcatacgaaccgagcatctgatcttctcaacatgctttttggagtgcagATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTTGTAGCAAGCATGGGAGACCCAACCTGCAAGAACGGCTTTAATTCTAACA
Basic information
species | Physcomitrella patens |
transcript | PP1S49_228V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208388988|gb|DC937321.1|DC937321EST: AAAGAATAGCCGTGTCTGATATTACACCGCTCTGCTTGCGATCTCAAGTG ATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTT
genomic: AAAGAATAGCCGTGTCTGATATTACACCGCTCTGCTTGCGATCTCAAGTGgtctctgtct ... tggagtgcagATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTT
EST:
gi|162258230|gb|FC434629.1|FC434629EST: AAAGAATAGCCGTGTCTGATATTACACCGCTCTGCTTGCGATCTCAAGTG ATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTT
genomic: AAAGAATAGCCGTGTCTGATATTACACCGCTCTGCTTGCGATCTCAAGTGgtctctgtct ... tggagtgcagATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccagatcatacgaaccgagcatctgatcttctcaacatgctttttggagtgcagATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTTGTAGCAAGCATGGGAGACCCAACCTGCAAGAACGGCTTTAATTCTAACA
atctgat putative branch site (score: 4)
tgcttttt putative PPT
ttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaattttgcgttgttctgagttttacaattgaaacttttgagcattccagatcatacgaaccgagcatctgatcttctcaacatgctttttggagtgcagATTGCGACTGCTGCTGTCTAGGTGGGCGTCGCCCCAATTTCCGGACATGTTGTAGCAAGCATGGGAGACCCAACCTGCAAGAACGGCTTTAATTCTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatgc