1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atacaattgattccagtgggttggttttaatggtttcgatgttattccatccgcgagagccttgactattttaggtcctggatttggatttcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAG
species | Physcomitrella patens |
transcript | PP1S49_191V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCTAGGAAAGCTCCCGT TGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACEST: gi|18331321|gb|BJ163331.1|BJ163331
genomic: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCTAGGAAAGCTCCCGTgtaagactcg ... tcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGAC
EST: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCTAGGAAAGCTCCCGT TGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACEST: gi|162268713|gb|FC445210.1|FC445210
genomic: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCTAGGAAAGCTCCCGTgtaagactcg ... tcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGAC
EST: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCT-----A------G- TGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGAC
genomic: AGTAGTAACTGCACCTTCTTGCCTCCCCAACCTGCTAGGAAAGCTCCCGTgtaagactcg ... tcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGAC
tccatccgcgagagccttgactattttaggtcctggatttggatttcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAG
ccttgac putative branch site (score: 2)
tttcttgt putative PPT
actatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaattgattccagtgggttggttttaatggtttcgatgttattccatccgcgagagccttgactattttaggtcctggatttggatttcttgtgcagTGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT