1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgaaatcttgcaccttgtctttaattggctcattctgagtagattgcatactaagcgcctccaagtcgttacttctgagctcgtacttgttttgttccagAAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCCATGCAGTGGGAGGATGATGAAGAAGATGAAATACAGCCCTCAAGGACGT
species | Physcomitrella patens |
transcript | PP1S49_11V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTGGCGTATTGACGGGTTGATTCGAGCAAGAGCGGCTTGCATCAATAG AAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCCEST: gi|18325090|gb|BJ157086.1|BJ157086
genomic: CAGTGGCGTATTGACGGGTTGATTCGAGCAAGAGCGGCTTGCATCAATAGgtttgtgcta ... tttgttccagAAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCC
EST: CAGTGGCGTATTGACGGGTTGATTCGAGCAAGAGCGGCTTGCATCAATAG AAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCC
genomic: CAGTGGCGTATTGACGGGTTGATTCGAGCAAGAGCGGCTTGCATCAATAGgtttgtgcta ... tttgttccagAAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCC
gcatactaagcgcctccaagtcgttacttctgagctcgtacttgttttgttccagAAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCCATGCAGTGGGAGGATGATGAAGAAGATGAAATACAGCCCTCAAGGACGT
ttttgttcc CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaatcttgcaccttgtctttaattggctcattctgagtagattgcatactaagcgcctccaagtcgttacttctgagctcgtacttgttttgttccagAAGTTCATTTCATAGGCGATGTGCTTCTAAGATCAAAATAAGCAGCGAGCCATGCAGTGGGAGGATGATGAAGAAGATGAAATACAGCCCTCAAGGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG