Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgagtcttcacaggaacacccagtaactgatgaaactatggtactttgtagattgctttatttgtgtaataatatacgttccaactgtatttccgaagtggcatggggtatctccagctcaagctttataacgcactctgtttcgtgaaattgagtagcaccctctaacccattcacttgcgaacttcgctctagGTATTTTGAACTTCCCAAGTGTGTAGACGCTGAGCTATTAGCGCATCCGCTTTCTCTGACGAAGCTCTGCTACTTCGTCATGGATTCTTTGAAGGAGCAA
Basic information
species | Physcomitrella patens |
transcript | PP1S49_109V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37845238|gb|BJ603246.1|BJ603246EST: AGCGCTGCTATTGTAAAGAAAGGTGAAATCAAGATGTGTAAAGCCTTCAG GTATTTTGAACTTCCCAAGTGTGTAGACGCTGAGCTATTAGCGCATCCGCT
genomic: AGCGCTGCTATTGTAAAGAAAGGTGAAATCAAGATGTGTAAAGCCTTCAGgtatgtgagt ... ttcgctctagGTATTTTGAACTTCCCAAGTGTGTAGACGCTGAGCTATTAGCGCATCCGCT
EST:
gi|37840583|gb|BJ598591.1|BJ598591EST: AAAGAAAGGTGAAATCAAGGATGTGTAAAGCCTTCAG GTATTTTGAACTTCCCAAGGTGTGTAGACGCTGAGCTATTAGCGCATCCGC
genomic: AAAGAAAGGTGAAATCAA-GATGTGTAAAGCCTTCAGgtatgtgagt ... ttcgctctagGTATTTTGAACTTCCCAA-GTGTGTAGACGCTGAGCTATTAGCGCATCCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgtgaaattgagtagcaccctctaacccattcacttgcgaacttcgctctagGTATTTTGAACTTCCCAAGTGTGTAGACGCTGAGCTATTAGCGCATCCGCTTTCTCTGACGAAGCTCTGCTACTTCGTCATGGATTCTTTGAAGGAGCAA
ctctaac putative branch site (score: 2)
cttcgctct putative PPT
tgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgagtcttcacaggaacacccagtaactgatgaaactatggtactttgtagattgctttatttgtgtaataatatacgttccaactgtatttccgaagtggcatggggtatctccagctcaagctttataacgcactctgtttcgtgaaattgagtagcaccctctaacccattcacttgcgaacttcgctctagGTATTTTGAACTTCCCAAGTGTGTAGACGCTGAGCTATTAGCGCATCCGCTTTCTCTGACGAAGCTCTGCTACTTCGTCATGGATTCTTTGAAGGAGCAA
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