1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactcatccaactattccaatacattgtgacgagtttatctctaaatttgtcgttttaaaaacacgggatcggatatatggtcattaaagttgcgtggatcgccagatagaagacaatattgaacttggggttgtctgggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTTCGAGGAAAGGCTTAGTTTTGGTTCTGTGAGAGGAGAGAGATTTTGGAG
species | Physcomitrella patens |
transcript | PP1S496_1V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|18351993|gb|BJ184045.1|BJ184045
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|208365248|gb|DC931186.1|DC931186
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|208369600|gb|DC936348.1|DC936348
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|18355006|gb|BJ187065.1|BJ187065
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|67703309|gb|BJ963542.1|BJ963542
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|208384500|gb|DC914972.1|DC914972
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|18330434|gb|BJ162440.1|BJ162440
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTEST: gi|67701842|gb|BJ962075.1|BJ962075
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
EST: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCAC TTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
genomic: GCTCGCAACGGAATCATGAGACACATTCCGGAACGAACCTGACTGACCACgtactcatcc ... gggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACT
gcgtggatcgccagatagaagacaatattgaacttggggttgtctgggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTTCGAGGAAAGGCTTAGTTTTGGTTCTGTGAGAGGAGAGAGATTTTGGAG
aatattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcatccaactattccaatacattgtgacgagtttatctctaaatttgtcgttttaaaaacacgggatcggatatatggtcattaaagttgcgtggatcgccagatagaagacaatattgaacttggggttgtctgggggtgcagTTGGGGTTAACAGGTGCTTTGCAGCTGGCGTGACGGAGGTAGTAGACCACTTCGAGGAAAGGCTTAGTTTTGGTTCTGTGAGAGGAGAGAGATTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG