1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggtcacgctctgtgcttcgaactcgtgtgtgttctatggagtttttgatacaagtctgtgagagtggagaggtgacatgaggtttattttgtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGTCATTACCTCCCTTGCCGACAGCTGAGCCGGAGACCGATTTATTTGGGG
species | Physcomitrella patens |
transcript | PP1S490_9V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCG GATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGEST: gi|100452446|gb|CJ975275.1|CJ975275
genomic: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCGgtaagttggt ... gtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
EST: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCG GATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGEST: gi|100372742|gb|BY948681.1|BY948681
genomic: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCGgtaagttggt ... gtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
EST: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCG GATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGEST: gi|208355697|gb|DC910519.1|DC910519
genomic: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCGgtaagttggt ... gtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
EST: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCG GATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGEST: gi|100357347|gb|BY983812.1|BY983812
genomic: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCGgtaagttggt ... gtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
EST: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCG GATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
genomic: CGTTCTGGGGTGTCCAACAATCTCTGCTGCCCGCTCTCATGTGGAATTCGgtaagttggt ... gtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTG
tgatacaagtctgtgagagtggagaggtgacatgaggtttattttgtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGTCATTACCTCCCTTGCCGACAGCTGAGCCGGAGACCGATTTATTTGGGG
ttttgat putative branch site (score: 5)
tttattttgtgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcacgctctgtgcttcgaactcgtgtgtgttctatggagtttttgatacaagtctgtgagagtggagaggtgacatgaggtttattttgtgttatcagGATATATTACAGTCTCCGGAGGAGCAGGCAGCTTTGCCTCCGGAGGGCGTGTCATTACCTCCCTTGCCGACAGCTGAGCCGGAGACCGATTTATTTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA