1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctggatcgaggattgaaggagatgtgttaggtaacagttatagttggaactgcatggtgttgcgtgagcatttatcaaaccagtatttgaatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAACAGCTGTGCAAGAGCTCCTTCTCGCAA
species | Physcomitrella patens |
transcript | PP1S48_71V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAEST: gi|18363518|gb|BJ195590.1|BJ195590
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCANTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGNCTCCAEST: gi|18350863|gb|BJ182914.1|BJ182914
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAEST: gi|162221494|gb|FC397303.1|FC397303
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAEST: gi|18346080|gb|BJ178123.1|BJ178123
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAEST: gi|18353130|gb|BJ185185.1|BJ185185
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAEST: gi|208360510|gb|DC930265.1|DC930265
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
EST: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAG GTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
genomic: ACGGAAAGAACGATGTGGATACCAGTGACAACATTCTTTCTCAACTCAAGgttttgttct ... aatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCA
tggaactgcatggtgttgcgtgagcatttatcaaaccagtatttgaatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAACAGCTGTGCAAGAGCTCCTTCTCGCAA
atttatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggatcgaggattgaaggagatgtgttaggtaacagttatagttggaactgcatggtgttgcgtgagcatttatcaaaccagtatttgaatgttgtagGTGAAGTTGACGGAGTTGCCTGGTCTTCCGCCTCTGTTCAAATCGTCTCCAACAGCTGTGCAAGAGCTCCTTCTCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT