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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggggcactagcttgcaattcgtactcgtagcttgaaagtcagtttctggtactcctattttgcggagttttgcggtgttcgagtctgaaggttgagagttttgattctgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCGAAGTACATTGACGTTATGGGCGTTCTTTTGTTATTGCTAGTAGCCTCAG

Basic information

species Physcomitrella patens
transcript PP1S48_57V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395513|gb|DC928928.1|DC928928
EST:     -AATT-TCGTC-CCG-CCG-GGAAG-TGACTCA-TTGCAAG-GGCTACTG                         ATACTTCAA-TGTGCCGTCA-CAATCCAAAANGCTGAGCGGCAATGGCCTC
genomic: AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTGgttaggggca ... tgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAA-GCTGAGCGGCAATGGCCTC
EST: gi|100384943|gb|BY969678.1|BY969678
EST:     AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTG                         ATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG
genomic: AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTGgttaggggca ... tgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG
EST: gi|18366577|gb|BJ198656.1|BJ198656
EST:     AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTG                         ATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG
genomic: AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTGgttaggggca ... tgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG
EST: gi|19787903|gb|BQ040684.1|BQ040684
EST:     AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTG                         ATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG
genomic: AAATTGTCGTCGCCGCCCGCGGAAGTTGACTCATTTGCAAGTGGCTACTGgttaggggca ... tgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggagttttgcggtgttcgagtctgaaggttgagagttttgattctgtgccgcagATACTTCAATTGTGCCGTCATAAATCCAAAAGCTGAGCGGCAATGGCCTCGAAGTACATTGACGTTATGGGCGTTCTTTTGTTATTGCTAGTAGCCTCAG
                                    ttttgat  putative branch site (score: 4)
                                    ttttgatt  TA-rich tract