1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccgaacctttaaacggtaattgagatccagttattttacgcaacaaattttcaggtttattcaatgaacttcactgatagattagccgaaaattatgcagGTTGAGAAGCTTCTACTGGAGTTGCAAAGTATGCCTGAAGAAGGGCCGCAGGTGCCTCCAGCTGAAAGGAACGACGGATTTAGGAGAGTATACAGCAACA
species | Physcomitrella patens |
transcript | PP1S48_56V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGAGAAATGCTGGATTTGCTATTGGACACTTCTCATGTTGTCTCCNAG GTTGAGAAGCTTCTACTGGAGTTGCAAAGTATGCCTGAANAAGGGCCGCANEST: gi|100384851|gb|BY969586.1|BY969586
genomic: CAAGAGAAATGCTGGATTTGCTATTGGACACTTCTCATGTTGTCTCCAAGgttcatctcc ... aattatgcagGTTGAGAAGCTTCTACTGGAGTTGCAAAGTATGCCTGAAGAAGGGCCGCAG
EST: CAAGAGAAATGCTGGATTTGCTATTGGACACTTCTCATGTTGTCTCCCAG GTTGAGAAGCTTCTACTGGAGTTGCAA
genomic: CAAGAGAAATGCTGGATTTGCTATTGGACACTTCTCATGTTGTCTCCAAGgttcatctcc ... aattatgcagGTTGAGAAGCTTCTACTGGAGTTGCAA
aattttcaggtttattcaatgaacttcactgatagattagccgaaaattatgcagGTTGAGAAGCTTCTACTGGAGTTGCAAAGTATGCCTGAAGAAGGGCCGCAGGTGCCTCCAGCTGAAAGGAACGACGGATTTAGGAGAGTATACAGCAACA
cactgat putative branch site (score: 3)
tttattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgaacctttaaacggtaattgagatccagttattttacgcaacaaattttcaggtttattcaatgaacttcactgatagattagccgaaaattatgcagGTTGAGAAGCTTCTACTGGAGTTGCAAAGTATGCCTGAAGAAGGGCCGCAGGTGCCTCCAGCTGAAAGGAACGACGGATTTAGGAGAGTATACAGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA