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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaggagtggttgcttctttaggtttgcttgcgaagacgtgcagctagttaatattgggtgagccttattttttggtgtatggtgtttgtttgcttgtagCATGACTTCCTTTTTCTGCCAATGGAGAATAGAGAGAATCGTGAGTTGTCACGTATCGCCTGGTTTTGGGAGACGTCAATTTGCATATTGGCACTGTGCT

Basic information

species Physcomitrella patens
transcript PP1S48_122V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345726|gb|BJ177769.1|BJ177769
EST:     GCCTCCGGAGCTGCGGGTAATTTTTTCACCGGAGCTTTCCAAGATCGGAG                         CATGACTTCCTTTTTCTGCCAATGGAGAATAGAGAGAATCGTGAGTTGTCA
genomic: GCCTCCGGAGCTGCGGGTAATTTTTTCACCGGAGCTTTCCAAGATCGGAGgtatgtttcg ... ttgcttgtagCATGACTTCCTTTTTCTGCCAATGGAGAATAGAGAGAATCGTGAGTTGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttaatattgggtgagccttattttttggtgtatggtgtttgtttgcttgtagCATGACTTCCTTTTTCTGCCAATGGAGAATAGAGAGAATCGTGAGTTGTCACGTATCGCCTGGTTTTGGGAGACGTCAATTTGCATATTGGCACTGTGCT
 agttaat  putative branch site (score: 4)
 tttgttt  putative PPT
 ttatttttt  TA-rich tract