1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggtgtactccagtaggggcaggtagtacgctctttcatgcgagtggtgtcccattaatggagtggtgacttagccttttgagtggcggttttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG
species | Physcomitrella patens |
transcript | PP1S48_101V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAG GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAEST: gi|37851284|gb|BJ609292.1|BJ609292
genomic: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAGgtgtgttaaa ... tttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGA
EST: AGAAAAGAAAGAGGAG GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGGACAAAGAAAGCAGGEST: gi|162273041|gb|FC449172.1|FC449172
genomic: AGAAAAGAAAGAGGAGgtgtgttaaa ... tttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAA-GACAAAGAAAGCAGG
EST: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAG GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAEST: gi|208382944|gb|DC927694.1|DC927694
genomic: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAGgtgtgttaaa ... tttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGA
EST: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAG GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAEST: gi|162177489|gb|FC353750.1|FC353750
genomic: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAGgtgtgttaaa ... tttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGA
EST: AAGATGGATGATGAGGCGCCTATTTTAATCGACGAGAAAAGAAAGAGGAG GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGA
genomic: AAGATGGATGATGAGGCGCCTGTTTTAATCGACGAGAAAAGAAAGAGGAGgtgtgttaaa ... tttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGA
ggtgtcccattaatggagtggtgacttagccttttgagtggcggttttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG
cattaat putative branch site (score: 3)
attaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtgtactccagtaggggcaggtagtacgctctttcatgcgagtggtgtcccattaatggagtggtgacttagccttttgagtggcggttttggtgcagGATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA