1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaggttttggttgagatttagggtgtgaggggcttgcacgatttctatttgtatcatgcatgtacaatggagactcctcaaagatttgatacttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAAGAATTCATGATGAGAGTTTTCACTTCGTGCAAGCAGATGTTGGAACAT
species | Physcomitrella patens |
transcript | PP1S488_11V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAEST: gi|208376880|gb|DC906835.1|DC906835
genomic: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
EST: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAEST: gi|100383633|gb|BY969162.1|BY969162
genomic: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
EST: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAEST: gi|208362168|gb|DC943553.1|DC943553
genomic: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
EST: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAEST: gi|18364080|gb|BJ196153.1|BJ196153
genomic: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
EST: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAEST: gi|67575819|gb|BJ948643.1|BJ948643
genomic: CTCGTCCTCACGGCATTGGCCGGCATCTTGTGCATGGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
EST: CGGCATCTTGGTGCATGGGCTTCATGTCGCAG GGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
genomic: CGGCATCTT-GTGCAT-GGCTTCATGTCGCAGgtgagtgaat ... acttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAA
tatttgtatcatgcatgtacaatggagactcctcaaagatttgatacttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAAGAATTCATGATGAGAGTTTTCACTTCGTGCAAGCAGATGTTGGAACAT
atttgat putative branch site (score: 5)
aaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggttttggttgagatttagggtgtgaggggcttgcacgatttctatttgtatcatgcatgtacaatggagactcctcaaagatttgatacttggacagGGCTACAGCGTTGTAGGTGTGGACGTAGCGAAACCTGTGGATGATGATCAAAGAATTCATGATGAGAGTTTTCACTTCGTGCAAGCAGATGTTGGAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG